src/bin: De-duplicate query.cpp, urlwrapper.cpp and remove clockconfig.cpp

The query bin command is already added earlier in the file, and does not
actually require to be linked against localestub. Removing the duplicate, as
it caused all the include directives to gcc to be duplicated, which caused
trouble in gcc2 when using #include_next directives.

Similarly, urlwrapper.cpp is a duplicate entry and does not actually require
libbnetapi.so.

The clockconfig tool has moved to the launch daemon in c16361c4.

Change-Id: I266ada433448a96bee8de325133a548f0985da59
Reviewed-on: https://review.haiku-os.org/c/haiku/+/6661
Reviewed-by: Adrien Destugues <[email protected]>

src/bin/Jamfile

@@ -143,15 +143,8 @@ StdBinCommands
 # standard commands that need libbe.so, libbnetapi.so, libsupc++.so
 StdBinCommands
 	open.cpp
-	urlwrapper.cpp
 	: be bnetapi [ TargetLibsupc++ ] : $(haiku-utils_rsrc) ;
 
-# commands that need libbe.so and the stub catalog
-StdBinCommands
-	clockconfig.cpp
-	query.cpp
-	: be localestub : $(haiku-utils_rsrc) ;
-
 # commands that need libbe.so, libsupc++.so and the stub catalog
 StdBinCommands
 	dstcheck.cpp